WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00108365 Phenotype Remark  Decreased Q35 aggregate formation
Remark  (Figure 6) shk-1 RNAi. Authors state RNAi clones obtained from the Ahringer and Vidal laboratories, Ahringer clone used for curation. If Ahringer clone not available, Vidal laboratory clone used for curation.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00014261 shk-1 ZK1321.2 Caenorhabditis elegans

6 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK1321.2b ZK1321.2b 1575   II: 9758254-9758378
CDS:ZK1321.2a ZK1321.2a 1446   II: 9758254-9758378
CDS:ZK1321.2c ZK1321.2c 1611   II: 9758254-9758378
CDS:ZK1321.2d ZK1321.2d 1506   II: 9760879-9760898
CDS:ZK1321.2e ZK1321.2e 1347   II: 9763355-9763380
CDS:ZK1321.2f ZK1321.2f 1308   II: 9765439-9765545

0 Laboratories

1 Phenotype

Identifier Name Description
WBPhenotype:0001405 protein aggregation variant Variations that result in the accumulation of soluble/insoluble protein aggregates in a particular cell or tissue, compared to control. Protein aggregates are often formed by interactions between misfolded protein molecules and/or deficiencies in proper protein folding.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00041267

0 Strain