WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00082844 Genotype  itr-1(sa73)
Phenotype Remark  itr-1(sa73) alone has longer defecation cycles than wildtype, but they are further increased in combination with shn-1 RNAi. shn-1 RNAi does not affect the defecation cycle length of gain of function itr-1 alleles (sy290, sy331 and sy328 tested by authors). Remark  itr-1(sa73) is a loss of function allele, unc-24(e138) is used as a genetic marker.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006444 shn-1 C33B4.3 Caenorhabditis elegans

3 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C33B4.3a C33B4.3a 3333   II: 11384925-11385154
CDS:C33B4.3c C33B4.3c 3423   II: 11384925-11385154
CDS:C33B4.3b C33B4.3b 2982   II: 11385122-11385154

1 Laboratories

Primary Identifier
KJ

1 Phenotype

Identifier Name Description
WBPhenotype:0000208 long defecation cycle The mean time between the onset of the defecation motor program is greater than that observed for control animals.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00006456

0 Strain