WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00077213 Genotype  ppgp-5::gfp
Phenotype Remark  RNAi reduced pgp-5 induction in ppgp-5::gfp worms compared to control animals following infection with P. aeruginosa strain PA14. Remark  The ppgp-5::gfp reporter strain contains an integrated transgene, ppgp-5::gfp, in which the GFP-encoding gene is under the control of the 300 bp upstream sequence of the pgp-5 promoter.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006575 tir-1 F13B10.1 Caenorhabditis elegans

8 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F13B10.1d F13B10.1d 1032   III: 3870183-3870268
CDS:F13B10.1a F13B10.1a 2793   III: 3870183-3870277
CDS:F13B10.1e F13B10.1e 2406   III: 3870183-3870277
CDS:F13B10.1g F13B10.1g 2784   III: 3870183-3870268
CDS:F13B10.1b F13B10.1b 1761   III: 3870183-3870268
CDS:F13B10.1c F13B10.1c 2946   III: 3870183-3870268
CDS:F13B10.1f F13B10.1f 2955   III: 3870183-3870277
CDS:F13B10.1h F13B10.1h 1041   III: 3870183-3870277

1 Laboratories

Primary Identifier
WE

3 Phenotype

Identifier Name Description
WBPhenotype:0000962 level of transgene expression variant Any variation in the measured expression of a gene product produced by exogenous DNA that has been introduced into the organism compared to its expression in control animals.
WBPhenotype:0001271 pathogen induced death increased Animals are more prone to lethality as a result of infection compared to control.
WBPhenotype:0001012 organism pathogen response variant Animals exhibit variations in their response to disease causing agents, compared to control. Pathogen response includes prevention, damage control and recovery from the infection caused by the attack.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00031023

0 Strain