WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00085855 Phenotype Remark  Accumulation of apoptotic intermediates in the germline.
Remark  Experiment SS544

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001340 etr-1 T01D1.2 Caenorhabditis elegans

19 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T01D1.2a T01D1.2a 1755   II: 163142-163324
CDS:T01D1.2g T01D1.2g 1542   II: 163142-163324
CDS:T01D1.2l T01D1.2l 1770   II: 163142-163324
CDS:T01D1.2d T01D1.2d 1608   II: 163142-163324
CDS:T01D1.2m T01D1.2m 1395   II: 164595-164643
CDS:T01D1.2o T01D1.2o 1170   II: 164595-164643
CDS:T01D1.2q T01D1.2q 1263   II: 164641-164643
CDS:T01D1.2r T01D1.2r 1044   II: 164641-164643
CDS:T01D1.2b T01D1.2b 1059   II: 166822-166905
CDS:T01D1.2u T01D1.2u 846   II: 166822-166905
CDS:T01D1.2v T01D1.2v 843   II: 167930-168047
CDS:T01D1.2w T01D1.2w 837   II: 167930-168047
CDS:T01D1.2x T01D1.2x 618   II: 167930-168047
CDS:T01D1.2e T01D1.2e 1761   II: 163142-163324
CDS:T01D1.2f T01D1.2f 1767   II: 163142-163324
CDS:T01D1.2n T01D1.2n 1389   II: 164595-164643
CDS:T01D1.2p T01D1.2p 1269   II: 164641-164643
CDS:T01D1.2s T01D1.2s 1071   II: 166822-166905
CDS:T01D1.2t T01D1.2t 1065   II: 166822-166905

1 Laboratories

Primary Identifier
OD

7 Phenotype

Identifier Name Description
WBPhenotype:0000730 apoptosis variant Animals exhibit variations in any processes that influence the programmed cell death pathway. Induction of the apoptotic pathway triggers the activity of proteolytic caspases, which in turn lead to the destruction of the cell.
WBPhenotype:0001355 gonad morphology variant Variations in the form or composition of a specialized tissue of the reproductive tract that produces the male or female gametes compared to control (Wormatlas).
WBPhenotype:0001180 accumulated germline cell corpses Animals exhibit an increase in the quantity of germ line cells that have undergone programmed cell death but have not been engulfed.
WBPhenotype:0001952 germline nuclear positioning variant Variations in the directed movement/or positioning of a nucleus to a specific location within the germline compartment compared to control.
WBPhenotype:0001982 cell membrane organization biogenesis variant Variations in the process(es) involved in the assembly, transport, arrangement or disassembly of cell membrane structures or components compared to control.
WBPhenotype:0001567 nuclei enlarged Nuclei of specific cells are larger compared to control animals.
WBPhenotype:0001969 germ cell compartment morphology variant Any variation in the form or composition of the compartments in the germline of females/hermaphrodites compared to control animals. In C. elegans these compartments contain a nucleus and are connected to a common cytoplasm (rachis). These compartments eventually undergo cellularization and become oocytes.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00038381

1 Strain

WormBase ID
WBStrain00029219