WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00097845 Genotype  opEx1313 [Pced-1::YFP::RAB-7]
Phenotype Remark  RNAi resulted in an accumulation of YFP::RAB-7 halos in phagosomes engulfing apoptotic cell corpses, suggesting a defect/arrest in phagosome maturation at the RAB-7(+) stage Remark  (Figure 2k, Table S1d) vps-39 RNAi. Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011625 vps-39 T08G5.5 Caenorhabditis elegans

4 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T08G5.5b T08G5.5b 2781   V: 14034593-14034805
CDS:T08G5.5d T08G5.5d 2772   V: 14034593-14034805
CDS:T08G5.5a T08G5.5a 2772   V: 14034593-14034805
CDS:T08G5.5c T08G5.5c 2763   V: 14034593-14034805

0 Laboratories

2 Phenotype

Identifier Name Description
WBPhenotype:0000679 transgene subcellular localization variant Any variation in the subcellular localization of a gene product produced by DNA coded for by exogenous genetic material that has been introduced into the organism compared to its expression in control animals.
WBPhenotype:0001846 phagosome maturation defective Early phagosomes fail to undergo the maturation process following the ingestion of particulate material by phagocytosis; During maturation, phagosomes acquire markers of late endosomes and lysosomes.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00036059

0 Strain