WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00110227 Genotype  sid-1(qt9); uthIs326 [Pges-1::cco-1HP]
Phenotype Remark  "In order to detect cell non-autonomous protection of tissues, we exposed worms to a sublethal hypoxic exposure, resulting in abolition of pharyngeal pumping in the vast majority of control worms, a behavior that requires pharyngeal myocytes, but not intestinal or neuronal cells [29]. Consistent with cell nonautonomous mtUPR protection, we observed preservation of pharyngeal pumping in both cco-1 hairpin-containing strains (Figure 4B)." Remark  (Figure 4B) intestinal hairpin cco-1 RNAi. Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000371 cox-5B F26E4.9 Caenorhabditis elegans
WBGene00045369 F26E4.14 F26E4.14 Caenorhabditis elegans

1 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F26E4.9 F26E4.9 399   I: 9789009-9789194

0 Laboratories

1 Phenotype

Identifier Name Description
WBPhenotype:0000634 pharyngeal pumping variant Any variation in the contraction and relaxation movements of the pharyngeal muscle that mediate feeding in nematodes compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00048404

0 Strain