| Algorithm | Authors only considered miRNA regions with at least 1 reads per-million from one of the libraries. These were tested for differential expression using the edgeR package, setting the common dispersion to 0.1 (since they did not have biological replicates) and normalizing with the TMM method. False Discovery Rates were calculated using the Benjamini & Hochberg procedure. | Description | miRNA that showed significantly increated expression after 12 hour starvation in L4 larva stage. Fold change was calculated by dividing the higher counts per million by the lower, but adding the sign from the logFC to indicate direction. |
| Primary Identifier | WBPaper00048790:12h-starvation_downregulated_miRNA | Regulated By Treatment | 12 hour starvation |
| WormBase Gene ID | Gene Name | Sequence Name | Organism |
|---|---|---|---|
| WBGene00003307 | mir-79 | C12C8.4 | Caenorhabditis elegans |
| WBGene00003313 | mir-85 | F49E12.11 | Caenorhabditis elegans |
| WBGene00002285 | let-7 | C05G5.6 | Caenorhabditis elegans |
| Remark | Definition | Other Name | Public Name | Primary Identifier |
|---|---|---|---|---|
| The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. | L4 larva Ce | WBls:0000038 |
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