WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Expression Cluster :

Algorithm  A Mann-Whitney U test with an empirical background model and FDR correction for multiple testing was used to detect expressed transcripts (Benjamini and Hochberg 1995). Genes and TARs with an FDR <= 0.05 were reported as expressed above background. Authors detected differentially expressed transcripts using a method based on linear models. Genes and TARs were called differentially expressed if the FDR was <= 0.05 and the fold change (FC) >= 2.0. To more strictly correct for potential false-positives resulting from multiple sample comparisons, authors divided individual FDR estimates by the number of samplesor sample comparisons, respectively. This resulted in an adjusted FDR of 1.3 * 0.0001 for expression above background and of 7.4 * 0.0001 for differential expression. Authors called genes selectively enriched in a given tissue if they met the following requirements: (1) enriched expression in a given tissue (FDR <= 0.05 and FC >= 2.0), (2) fold change versus reference among the upper 40% of the positive FC range observed for this gene across all tissues, and (3) fold-change entropy among the lower 40% of the distribution observed for all genes. Description  Genes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at both embryonic and larval stages.
Primary Identifier  WBPaper00037950:dopaminergic-neurons_CoreEnriched
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1 Anatomy Terms

Definition Name Synonym Primary Identifier
Neuron that uses dopamine (DA) as a neurotransmitter. dopaminergic neuron   WBbt:0006746

150 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000059 acr-20 R06A4.10 Caenorhabditis elegans
WBGene00000135 amt-3 M195.3 Caenorhabditis elegans
WBGene00000174 aqp-6 C32C4.2 Caenorhabditis elegans
WBGene00000239 bas-1 C05D2.4 Caenorhabditis elegans
WBGene00000244 bbs-8 T25F10.5 Caenorhabditis elegans
WBGene00000284 cah-6 T28F2.3 Caenorhabditis elegans
WBGene00000295 cat-1 W01C8.6 Caenorhabditis elegans
WBGene00000296 cat-2 B0432.5 Caenorhabditis elegans
WBGene00000298 cat-4 F32G8.6 Caenorhabditis elegans
WBGene00000403 casy-1 B0034.3 Caenorhabditis elegans
WBGene00000463 ceh-43 C28A5.4 Caenorhabditis elegans
WBGene00000484 che-2 F38G1.1 Caenorhabditis elegans
WBGene00000490 che-11 C27A7.4 Caenorhabditis elegans
WBGene00000492 che-13 F59C6.7 Caenorhabditis elegans
WBGene00000914 daf-19 F33H1.1 Caenorhabditis elegans
WBGene00000934 dat-1 T23G5.5 Caenorhabditis elegans
WBGene00000995 die-1 C18D1.1 Caenorhabditis elegans
WBGene00001053 dop-2 K09G1.4 Caenorhabditis elegans
WBGene00001117 dyf-1 F54C1.5 Caenorhabditis elegans
WBGene00001121 dyf-5 M04C9.5 Caenorhabditis elegans
WBGene00001127 dyf-11 C02H7.1 Caenorhabditis elegans
WBGene00001440 fkh-8 F40H3.4 Caenorhabditis elegans
WBGene00001447 flp-4 C18D1.3 Caenorhabditis elegans
WBGene00001452 flp-9 C36H8.3 Caenorhabditis elegans
WBGene00001594 glc-4 C27H5.8 Caenorhabditis elegans
WBGene00001709 grk-2 W02B3.2 Caenorhabditis elegans
WBGene00001987 hot-2 Y39B6A.48 Caenorhabditis elegans
WBGene00003232 mgl-1 ZC506.4 Caenorhabditis elegans
WBGene00003657 nhr-67 C08F8.8 Caenorhabditis elegans
WBGene00003732 nhx-4 F14B8.1 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The whole period of embryogenesis in the nematode Caenorhabditis elegans, from the formation of an egg until hatching. embryo Ce WBls:0000003
  A developmental life stage of the nematode Caenorhabditis elegans that occurs from egg hatching until adulthood. larva Ce WBls:0000023

0 Processes

0 Regulated By Gene

0 Regulated By Molecule