WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Anatomy Term :

Definition  Neuron class of two pharyngeal neurosecretory-motor neurons. Name  NSM
Primary Identifier  WBbt:0003666 Synonym  neurosecretory-motor neuron
Paste the following link
Lists
This AnatomyTerm isn't in any lists. Upload a list.

2 Children

Definition Name Synonym Primary Identifier
Pharyngeal neurosecretory motorneuron, contain serotonin NSML lineage name: ABaraapapaav WBbt:0004457
Pharyngeal neurosecretory motorneuron, contain serotonin NSMR lineage name: ABaraapppaav WBbt:0004446

8 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Genes significantly enriched in NSM neurons (isolated by FACS) versus the reference, according to RNAseq analysis towards total RNA. Gene expression quantification and differential expression was analyzed using cufflinks v2.2.1. Enriched contains only genes significantly enriched (differentially expressed >= 2.4 fold in total RNA or >= 3.2 fold in DSN treated total RNA) in the NSM neurons versus the reference. WBPaper00045974:NSM_enriched_totalRNA_RNAseq
  Genes significantly enriched in NSM neurons (isolated by FACS) versus the reference, according to tiling array analysis towards total RNA. A linear model and moderated t-statistic were used to determine differentially expressed genes as implemented by the limma package (v3.21.4). Enriched list contains only genes significantly enriched in the NSM neurons versus the reference <=1.5X and <= 5% FDR. WBPaper00045974:NSM_enriched_totalRNA_tiling
  Genes significantly enriched in NSM neurons (isolated by FACS) versus the reference, according to RNAseq analysis towards DSN treated(Duplex-Specific Nuclease method to deplete rRNA sequences) total RNA. Gene expression quantification and differential expression was analyzed using cufflinks v2.2.1. Enriched contains only genes significantly enriched (differentially expressed >= 2.4 fold in total RNA or >= 3.2 fold in DSN treated total RNA) in the NSM neurons versus the reference. WBPaper00045974:NSM_enriched_DSN-treated_RNAseq
  Transcripts enriched in NSM according to single cell RNAseq. Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched. WBPaper00061651:NSM_enriched
  Single-cell RNA-Seq cell group 132 expressed in: RMG. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:132
  Single-cell RNA-Seq cell group 131 expressed in: SDQ and subpopulation of NSM. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:131
  Transcripts that showed significantly altered expression in male comparing to in hermaprhodite animals in cell cluster NSM.txt. fold change > 2, FDR < 0.05 WBPaper00068349:male_downregulated_NSM.txt
  Transcripts that showed significantly altered expression in male comparing to in hermaprhodite animals in cell cluster NSM.txt. fold change > 2, FDR < 0.05 WBPaper00068349:male_upregulated_NSM.txt

0 Expression Patterns

0 Life Stages

3 Parents

Definition Name Synonym Primary Identifier
neuron of the pharyngeal nervous system. pharyngeal neuron   WBbt:0005439
neuron that uses serotonin as a vesicular neurotransmitter. serotonergic neuron 5-HT neuron WBbt:0006837
posterior segment of pharyngeal corpus. metacorpus   WBbt:0003711