WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Anatomy Term :

Definition  Neuron class of two neurons with cell bodies that are situated sub-dorsally in the pseudocoelomic cavity just posterior to the ring neuropile. Name  URX
Primary Identifier  WBbt:0006846
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2 Children

Definition Name Synonym Primary Identifier
Ring interneuron URXL lineage name: ABplaaaaappp WBbt:0004928
Ring interneuron URXR lineage name: ABarpapaappp WBbt:0004926

7 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly altered expression at URX, AQR, and PQR neurons in camt-1(ok515) animals comparing to in wild type AX1888-1 strain. RNA-seq data were mapped using PRAGUI - a Python 3-based pipeline for RNA-seq data analysis. WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
  Transcripts enriched in URX according to single cell RNAseq. Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched. WBPaper00061651:URX_enriched
  Single-cell RNA-Seq cell group 122 expressed in: URX_AQR_PQR. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:122
  Transcripts that showed significantly altered expression in male comparing to in hermaprhodite animals in cell cluster URX.txt. fold change > 2, FDR < 0.05 WBPaper00068349:male_downregulated_URX.txt
  Transcripts that showed significantly altered expression in daf-2(e1370) comparing to in N2 in cell cluster URX. fold change > 2, FDR < 0.05 WBPaper00067693:daf-2(e1370)_upregulated_URX
  Transcripts that showed significantly altered expression in daf-2(e1370) comparing to in N2 in cell cluster URX. fold change > 2, FDR < 0.05 WBPaper00067693:daf-2(e1370)_downregulated_URX
  Transcripts that showed significantly altered expression in male comparing to in hermaprhodite animals in cell cluster URX.txt. fold change > 2, FDR < 0.05 WBPaper00068349:male_upregulated_URX.txt

0 Expression Patterns

0 Life Stages

4 Parents

Definition Name Synonym Primary Identifier
  interneuron   WBbt:0005113
neuron type, neurons that have ciliated nerve endings. ciliated neuron   WBbt:0006816
neuron that has neural processes in the nerve ring. nerve ring neuron   WBbt:0006974
Neuron that senses and responds to oxygen. oxygen sensory neuron   WBbt:0008432