WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10395
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9 Anatomy Terms

Definition Name Synonym Primary Identifier
embryonic cell Dpaa   WBbt:0006233
embryonic cell Epla   WBbt:0006661
embryonic cell Earp   WBbt:0006646
embryonic cell Eala   WBbt:0006104
embryonic cell Epra   WBbt:0006321
embryonic cell Eara   WBbt:0006161
embryonic cell Ealp   WBbt:0006546
embryonic cell Eprp   WBbt:0006507
embryonic cell Eplp   WBbt:0006496

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003669 nhr-79 T26H2.9 Caenorhabditis elegans

99 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 267th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 267 min post first-cleavage Ce WBls:0000378
  The time period encompassing the 266th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 266 min post first-cleavage Ce WBls:0000377
  The time period encompassing the 265th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 265 min post first-cleavage Ce WBls:0000376
  The time period encompassing the 264th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 264 min post first-cleavage Ce WBls:0000375
  The time period encompassing the 271st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 271 min post first-cleavage Ce WBls:0000382
  The time period encompassing the 270th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 270 min post first-cleavage Ce WBls:0000381
  The time period encompassing the 269th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 269 min post first-cleavage Ce WBls:0000380
  The time period encompassing the 268th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 268 min post first-cleavage Ce WBls:0000379
  The time period encompassing the 273rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 273 min post first-cleavage Ce WBls:0000384
  The time period encompassing the 272nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 272 min post first-cleavage Ce WBls:0000383
  The time period encompassing the 175th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 175 min post first-cleavage Ce WBls:0000286
  The time period encompassing the 174th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 174 min post first-cleavage Ce WBls:0000285
  The time period encompassing the 173rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 173 min post first-cleavage Ce WBls:0000284
  The time period encompassing the 179th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 179 min post first-cleavage Ce WBls:0000290
  The time period encompassing the 178th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 178 min post first-cleavage Ce WBls:0000289
  The time period encompassing the 177th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 177 min post first-cleavage Ce WBls:0000288
  The time period encompassing the 176th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 176 min post first-cleavage Ce WBls:0000287
  The time period encompassing the 183rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 183 min post first-cleavage Ce WBls:0000294
  The time period encompassing the 182nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 182 min post first-cleavage Ce WBls:0000293
  The time period encompassing the 181st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 181 min post first-cleavage Ce WBls:0000292
  The time period encompassing the 180th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 180 min post first-cleavage Ce WBls:0000291
  The time period encompassing the 187th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 187 min post first-cleavage Ce WBls:0000298
  The time period encompassing the 186th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 186 min post first-cleavage Ce WBls:0000297
  The time period encompassing the 185th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 185 min post first-cleavage Ce WBls:0000296
  The time period encompassing the 184th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 184 min post first-cleavage Ce WBls:0000295
  The time period encompassing the 191st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 191 min post first-cleavage Ce WBls:0000302
  The time period encompassing the 190th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 190 min post first-cleavage Ce WBls:0000301
  The time period encompassing the 189th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 189 min post first-cleavage Ce WBls:0000300
  The time period encompassing the 188th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 188 min post first-cleavage Ce WBls:0000299
  The time period encompassing the 195th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 195 min post first-cleavage Ce WBls:0000306