WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Anatomy Term :

Definition  cell destined to die by apoptosis (programmed cell death, PCD). Name  apoptotic cell
Primary Identifier  WBbt:0006925

153 Children

Definition Name Synonym Primary Identifier
post-embryonic cell of pedigree QR.aa QR.aa   WBbt:0007280
post-embryonic cell of pedigree QR.pp QR.pp   WBbt:0007283
post-embryonic cell of pedigree QL.aa QL.aa   WBbt:0007275
post-embryonic cell of pedigree QL.pp QL.pp   WBbt:0007278
embryonic cell ABalaappaa   WBbt:0006065
embryonic cell MSpaapp   WBbt:0006204
embryonic cell ABarappaapp   WBbt:0005891
embryonic cell ABprapapppa   WBbt:0005889
embryonic cell ABalapaappap   WBbt:0005856
embryonic cell MSpppaaa   WBbt:0005951
embryonic cell ABalppppppap   WBbt:0005952
embryonic cell ABplpppapp   WBbt:0005958
embryonic cell ABalappaapp   WBbt:0005963
embryonic cell ABplapaaaaa   WBbt:0005967
embryonic cell ABprapppaap   WBbt:0005937
embryonic cell ABprppaapaa   WBbt:0005941
embryonic cell ABalpppapppp   WBbt:0005942
embryonic cell ABplpaappppp   WBbt:0005947
embryonic cell ABalppaapa   WBbt:0005916
embryonic cell ABpraaaaapv   WBbt:0005917
embryonic cell MSaaaappa   WBbt:0005918
embryonic cell ABalaapapa   WBbt:0005920
embryonic cell MSapaapa   WBbt:0005928
embryonic cell ABalaappppap   WBbt:0005900
embryonic cell ABalaaaalar   WBbt:0005995
embryonic cell MSaapapap   WBbt:0005996
embryonic cell ABprppaaaapa   WBbt:0005997
embryonic cell ABpraaapaav   WBbt:0005974
embryonic cell ABalaapaaal   WBbt:0005985
embryonic cell ABpraaaappa   WBbt:0006012

0 Expression Clusters

7 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
    Expr10098 Using transcriptional reporters, we found that the nrf-5 promoter (Pnrf-5) drove expression in body wall muscle cells. We also generated NRF-5 translational fusions with or without the secretion signal (Pnrf-5ssGFP::mNRF-5 and Pnrf-5GFP::mNRF-5). Secreted GFP::mNRF-5 (ssGFP::mNRF-5) displayed a diffuse staining pattern and associated with the basal surface of pharyngeal cells and the basal-lateral membranes of the intestine, whereas nonsecretory GFP::mNRF-5 labeled body wall muscle cells but not the intestine. These results suggest that NRF-5 is synthesized in and secreted from muscle cells to recognize apoptotic cells and associate with the basal surface of pharyngeal and intestine cells.  
    Expr13375 The CED-3::GFP translational reporter was expressed mostly in embryos and the adult germline. In embryos, we often found an enrichment of GFP signal within the apoptotic corpses compared with the surrounding cells. In the germline, CED-3::GFP was expressed primarily in the oocyte region, with very weak to no expression in the mitotic and early meiotic zones. In oocytes, CED-3::GFP showed a significant enrichment in the nuclei, whereas, in the rest of the germline, we observed an accumulation of GFP signal in the perinuclear region.
    Expr13488   GFP::CED-11 was first detected in pre-bean-stage embryos, in which it was expressed broadly and had a diffuse cytoplasmic localization. By the twofold embryonic stage, GFP::CED-11 had a more restricted pattern inside the cell and also could be seen on the plasma membrane. GFP::CED- 11 was expressed in a few cells in the heads and tails of L1 larvae, where it was localized primarily to the plasma membrane. We detected GFP::CED-11 in puncta at the perimeter of apoptotic cells.
    Expr11935 let-23 is expressed in dying cells. Notably, the GFP signal was observed in the ABpl/rpppapp corpses.  
    Expr13399 In support of a role of ARX-2 in Q cell corpse clearance, ARX-2::GFP was recruited onto Q cell corpses at 37 ± 9 min (mean ± SD; n = 20) after Q cell birth, and the ARX-2::GFP rings lasted for 19 ± 9 min (n = 20). The corpse was completely degraded 34 ± 18 min (n = 20) after the disappearance of ARX-2::GFP, which suggests that ARX-2 may function during the engulfment of Q cell corpses but may not be involved in the final degradation inside the phagosome.  
    Expr13400 A triple fluorescence animal that expresses ARX-2::TagRFP knock-in, GFP::WSP-1 knock-in, and the Q cell marker Plin-32::TagBFP shows that the majority of ARX-2:: TagRFP was recruited on the Q cell corpse at approximately the same time as GFP::WSP-1 and that the ARX-2::TagRFP fluorescence was largely co-localized with GFP::WSP-1 (n = 10).  
    Expr12675    

0 Life Stages

1 Parents

Definition Name Synonym Primary Identifier
a cellular object that consists of subcellular components, expresses genes or functions. Cell Cell type WBbt:0004017