WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred Expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10412
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19 Anatomy Terms

Definition Name Synonym Primary Identifier
embryonic cell ABalpaapp   WBbt:0006708
embryonic cell ABalpaaap   WBbt:0005850
embryonic cell ABaraaaaa   WBbt:0006135
embryonic cell ABalpaapa   WBbt:0006181
embryonic cell ABalpaaaa   WBbt:0006198
embryonic cell ABaraaapp   WBbt:0006189
embryonic cell ABaraaaap   WBbt:0006311
embryonic cell ABalpapaa   WBbt:0006386
embryonic cell Epla   WBbt:0006661
embryonic cell Earp   WBbt:0006646
embryonic cell Eala   WBbt:0006104
embryonic cell Epra   WBbt:0006321
embryonic cell Eara   WBbt:0006161
embryonic cell Ealp   WBbt:0006546
embryonic cell Eprp   WBbt:0006507
embryonic cell Eplp   WBbt:0006496
embryonic cell ABaraaapap   WBbt:0005971
embryonic cell ABaraaapaa   WBbt:0006359
embryonic cell ABaraapaaa   WBbt:0006445

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004013 pha-4 F38A6.1 Caenorhabditis elegans

114 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 267th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 267 min post first-cleavage Ce WBls:0000378
  The time period encompassing the 266th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 266 min post first-cleavage Ce WBls:0000377
  The time period encompassing the 265th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 265 min post first-cleavage Ce WBls:0000376
  The time period encompassing the 264th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 264 min post first-cleavage Ce WBls:0000375
  The time period encompassing the 271st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 271 min post first-cleavage Ce WBls:0000382
  The time period encompassing the 270th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 270 min post first-cleavage Ce WBls:0000381
  The time period encompassing the 269th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 269 min post first-cleavage Ce WBls:0000380
  The time period encompassing the 268th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 268 min post first-cleavage Ce WBls:0000379
  The time period encompassing the 275th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 275 min post first-cleavage Ce WBls:0000386
  The time period encompassing the 274th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 274 min post first-cleavage Ce WBls:0000385
  The time period encompassing the 273rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 273 min post first-cleavage Ce WBls:0000384
  The time period encompassing the 272nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 272 min post first-cleavage Ce WBls:0000383
  The time period encompassing the 279th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 279 min post first-cleavage Ce WBls:0000390
  The time period encompassing the 278th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 278 min post first-cleavage Ce WBls:0000389
  The time period encompassing the 277th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 277 min post first-cleavage Ce WBls:0000388
  The time period encompassing the 276th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 276 min post first-cleavage Ce WBls:0000387
  The time period encompassing the 283rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 283 min post first-cleavage Ce WBls:0000394
  The time period encompassing the 282nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 282 min post first-cleavage Ce WBls:0000393
  The time period encompassing the 281st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 281 min post first-cleavage Ce WBls:0000392
  The time period encompassing the 280th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 280 min post first-cleavage Ce WBls:0000391
  The time period encompassing the 287th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 287 min post first-cleavage Ce WBls:0000398
  The time period encompassing the 286th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 286 min post first-cleavage Ce WBls:0000397
  The time period encompassing the 285th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 285 min post first-cleavage Ce WBls:0000396
  The time period encompassing the 284th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 284 min post first-cleavage Ce WBls:0000395
  The time period encompassing the 291st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 291 min post first-cleavage Ce WBls:0000402
  The time period encompassing the 290th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 290 min post first-cleavage Ce WBls:0000401
  The time period encompassing the 289th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 289 min post first-cleavage Ce WBls:0000400
  The time period encompassing the 288th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 288 min post first-cleavage Ce WBls:0000399
  The time period encompassing the 295th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 295 min post first-cleavage Ce WBls:0000406
  The time period encompassing the 294th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 294 min post first-cleavage Ce WBls:0000405