WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10399
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20 Anatomy Terms

Definition Name Synonym Primary Identifier
embryonic cell Epl   WBbt:0006000
embryonic cell Epra   WBbt:0006321
embryonic cell Eprp   WBbt:0006507
embryonic cell Cpapp   WBbt:0005897
embryonic cell Cpapa   WBbt:0005962
embryonic cell ABprpppa   WBbt:0005943
embryonic cell ABplappap   WBbt:0006067
embryonic cell ABprpppp   WBbt:0006179
embryonic cell ABplpppaa   WBbt:0006222
embryonic cell ABprapapp   WBbt:0006290
embryonic cell ABprappa   WBbt:0006269
embryonic cell ABplappaa   WBbt:0006371
embryonic cell ABplppppa   WBbt:0006352
embryonic cell ABplapapp   WBbt:0006413
embryonic cell ABplappp   WBbt:0006470
embryonic cell ABprapapa   WBbt:0006510
embryonic cell ABplppppp   WBbt:0006574
embryonic cell ABplpppap   WBbt:0006665
embryonic cell ABplapapa   WBbt:0006677
embryonic cell ABprappp   WBbt:0006702

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003779 nob-1 Y75B8A.2 Caenorhabditis elegans

99 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 147th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 147 min post first-cleavage Ce WBls:0000258
  The time period encompassing the 151st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 151 min post first-cleavage Ce WBls:0000262
  The time period encompassing the 150th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 150 min post first-cleavage Ce WBls:0000261
  The time period encompassing the 149th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 149 min post first-cleavage Ce WBls:0000260
  The time period encompassing the 148th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 148 min post first-cleavage Ce WBls:0000259
  The time period encompassing the 155th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 155 min post first-cleavage Ce WBls:0000266
  The time period encompassing the 154th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 154 min post first-cleavage Ce WBls:0000265
  The time period encompassing the 153rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 153 min post first-cleavage Ce WBls:0000264
  The time period encompassing the 152nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 152 min post first-cleavage Ce WBls:0000263
  The time period encompassing the 159th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 159 min post first-cleavage Ce WBls:0000270
  The time period encompassing the 158th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 158 min post first-cleavage Ce WBls:0000269
  The time period encompassing the 157th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 157 min post first-cleavage Ce WBls:0000268
  The time period encompassing the 156th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 156 min post first-cleavage Ce WBls:0000267
  The time period encompassing the 163rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 163 min post first-cleavage Ce WBls:0000274
  The time period encompassing the 162nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 162 min post first-cleavage Ce WBls:0000273
  The time period encompassing the 161st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 161 min post first-cleavage Ce WBls:0000272
  The time period encompassing the 160th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 160 min post first-cleavage Ce WBls:0000271
  The time period encompassing the 166th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 166 min post first-cleavage Ce WBls:0000277
  The time period encompassing the 165th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 165 min post first-cleavage Ce WBls:0000276
  The time period encompassing the 164th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 164 min post first-cleavage Ce WBls:0000275
  The time period encompassing the 167th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 167 min post first-cleavage Ce WBls:0000278
  The time period encompassing the 171st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 171 min post first-cleavage Ce WBls:0000282
  The time period encompassing the 170th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 170 min post first-cleavage Ce WBls:0000281
  The time period encompassing the 169th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 169 min post first-cleavage Ce WBls:0000280
  The time period encompassing the 168th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 168 min post first-cleavage Ce WBls:0000279
  The time period encompassing the 175th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 175 min post first-cleavage Ce WBls:0000286
  The time period encompassing the 174th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 174 min post first-cleavage Ce WBls:0000285
  The time period encompassing the 173rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 173 min post first-cleavage Ce WBls:0000284
  The time period encompassing the 172nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 172 min post first-cleavage Ce WBls:0000283
  The time period encompassing the 179th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 179 min post first-cleavage Ce WBls:0000290