WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred Expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10443
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164 Anatomy Terms

Definition Name Synonym Primary Identifier
Embryonic head hypodermal cell XXXR lineage name: ABarpappaa WBbt:0004579
embryonic cell ABalaappa   WBbt:0006037
embryonic cell ABalapapa   WBbt:0006314
embryonic cell ABplaappa   WBbt:0006519
embryonic cell ABalpppap   WBbt:0006641
embryonic cell ABpraaaaa   WBbt:0006631
embryonic cell ABplaaapa   WBbt:0006680
embryonic cell ABalpaapp   WBbt:0006708
embryonic cell ABprpappp   WBbt:0005847
embryonic cell ABalpaaap   WBbt:0005850
embryonic cell ABplaapap   WBbt:0005887
embryonic cell ABplaapaa   WBbt:0005866
embryonic cell ABpraaapa   WBbt:0005895
embryonic cell ABalpappa   WBbt:0005924
embryonic cell ABplpapaa   WBbt:0005955
embryonic cell ABplaappp   WBbt:0005948
embryonic cell ABaraapap   WBbt:0006006
embryonic cell ABalppaap   WBbt:0006020
embryonic cell Dpa   WBbt:0006045
embryonic cell ABpraappa   WBbt:0006035
embryonic cell ABpraapap   WBbt:0006062
embryonic cell ABplpaaaa   WBbt:0006099
embryonic cell ABprpappa   WBbt:0006088
embryonic cell ABplpaapa   WBbt:0006115
embryonic cell ABpraapaa   WBbt:0006108
embryonic cell ABalppaaa   WBbt:0006129
embryonic cell ABplpapap   WBbt:0006177
embryonic cell Dap   WBbt:0006210
embryonic cell Dpp   WBbt:0006199
embryonic cell ABalpaaaa   WBbt:0006198

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011964 saeg-2 T23G5.6 Caenorhabditis elegans

398 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 155th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 155 min post first-cleavage Ce WBls:0000266
  The time period encompassing the 154th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 154 min post first-cleavage Ce WBls:0000265
  The time period encompassing the 153rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 153 min post first-cleavage Ce WBls:0000264
  The time period encompassing the 159th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 159 min post first-cleavage Ce WBls:0000270
  The time period encompassing the 158th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 158 min post first-cleavage Ce WBls:0000269
  The time period encompassing the 157th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 157 min post first-cleavage Ce WBls:0000268
  The time period encompassing the 156th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 156 min post first-cleavage Ce WBls:0000267
  The time period encompassing the 163rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 163 min post first-cleavage Ce WBls:0000274
  The time period encompassing the 162nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 162 min post first-cleavage Ce WBls:0000273
  The time period encompassing the 161st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 161 min post first-cleavage Ce WBls:0000272
  The time period encompassing the 160th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 160 min post first-cleavage Ce WBls:0000271
  The time period encompassing the 166th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 166 min post first-cleavage Ce WBls:0000277
  The time period encompassing the 165th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 165 min post first-cleavage Ce WBls:0000276
  The time period encompassing the 164th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 164 min post first-cleavage Ce WBls:0000275
  The time period encompassing the 267th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 267 min post first-cleavage Ce WBls:0000378
  The time period encompassing the 266th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 266 min post first-cleavage Ce WBls:0000377
  The time period encompassing the 265th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 265 min post first-cleavage Ce WBls:0000376
  The time period encompassing the 264th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 264 min post first-cleavage Ce WBls:0000375
  The time period encompassing the 271st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 271 min post first-cleavage Ce WBls:0000382
  The time period encompassing the 270th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 270 min post first-cleavage Ce WBls:0000381
  The time period encompassing the 269th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 269 min post first-cleavage Ce WBls:0000380
  The time period encompassing the 268th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 268 min post first-cleavage Ce WBls:0000379
  The time period encompassing the 275th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 275 min post first-cleavage Ce WBls:0000386
  The time period encompassing the 274th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 274 min post first-cleavage Ce WBls:0000385
  The time period encompassing the 273rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 273 min post first-cleavage Ce WBls:0000384
  The time period encompassing the 272nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 272 min post first-cleavage Ce WBls:0000383
  The time period encompassing the 279th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 279 min post first-cleavage Ce WBls:0000390
  The time period encompassing the 278th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 278 min post first-cleavage Ce WBls:0000389
  The time period encompassing the 277th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 277 min post first-cleavage Ce WBls:0000388
  The time period encompassing the 276th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 276 min post first-cleavage Ce WBls:0000387