WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10378
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128 Anatomy Terms

Definition Name Synonym Primary Identifier
Postembryonic blast cells for ventral cord motorneurons, ventral hypodermis, vulva, male preanal ganglion; ventral hypodermis in L1 P11 lineage name: ABplapappa WBbt:0004410
Seam hypodermal cell, postembryonic blast cell H1L lineage name: ABplaaappp WBbt:0004766
Seam hypodermal cell, postembryonic blast cell H1R lineage name: ABarpapppp WBbt:0004765
Seam hypodermal cell H0L lineage name: ABplaaappa WBbt:0004778
Seam hypodermal cell H0R lineage name: ABarpapppa WBbt:0004777
Embryonic head hypodermal cell XXXR lineage name: ABarpappaa WBbt:0004579
Seam hypodermal cell, postembryonic blast cell V3L lineage name: ABplappapa WBbt:0004898
embryonic cell ABplaaapa   WBbt:0006680
embryonic cell ABpraaapp   WBbt:0006716
embryonic cell ABalpaapp   WBbt:0006708
embryonic cell Dapp   WBbt:0005870
embryonic cell ABpraaapa   WBbt:0005895
embryonic cell ABplpapaa   WBbt:0005955
embryonic cell Dapa   WBbt:0006004
embryonic cell Dpa   WBbt:0006045
embryonic cell ABpraappa   WBbt:0006035
embryonic cell ABprpappa   WBbt:0006088
embryonic cell ABpraapaa   WBbt:0006108
embryonic cell ABalpaapa   WBbt:0006181
embryonic cell ABplpapap   WBbt:0006177
embryonic cell Dpp   WBbt:0006199
embryonic cell ABplpappa   WBbt:0006232
embryonic cell ABpraappp   WBbt:0006270
embryonic cell Daa   WBbt:0006289
embryonic cell ABplpappp   WBbt:0006390
embryonic cell ABprpapaa   WBbt:0006446
Embryonic cell of pedigree MSppaaap. MSppaaap DR2 WBbt:0006342
embryonic cell Eala   WBbt:0006104
embryonic cell Epra   WBbt:0006321
embryonic cell Ealp   WBbt:0006546

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003639 nhr-49 K10C3.6 Caenorhabditis elegans

379 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 267th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 267 min post first-cleavage Ce WBls:0000378
  The time period encompassing the 266th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 266 min post first-cleavage Ce WBls:0000377
  The time period encompassing the 265th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 265 min post first-cleavage Ce WBls:0000376
  The time period encompassing the 264th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 264 min post first-cleavage Ce WBls:0000375
  The time period encompassing the 271st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 271 min post first-cleavage Ce WBls:0000382
  The time period encompassing the 270th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 270 min post first-cleavage Ce WBls:0000381
  The time period encompassing the 269th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 269 min post first-cleavage Ce WBls:0000380
  The time period encompassing the 268th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 268 min post first-cleavage Ce WBls:0000379
  The time period encompassing the 275th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 275 min post first-cleavage Ce WBls:0000386
  The time period encompassing the 274th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 274 min post first-cleavage Ce WBls:0000385
  The time period encompassing the 273rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 273 min post first-cleavage Ce WBls:0000384
  The time period encompassing the 272nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 272 min post first-cleavage Ce WBls:0000383
  The time period encompassing the 279th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 279 min post first-cleavage Ce WBls:0000390
  The time period encompassing the 278th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 278 min post first-cleavage Ce WBls:0000389
  The time period encompassing the 277th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 277 min post first-cleavage Ce WBls:0000388
  The time period encompassing the 276th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 276 min post first-cleavage Ce WBls:0000387
  The time period encompassing the 283rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 283 min post first-cleavage Ce WBls:0000394
  The time period encompassing the 282nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 282 min post first-cleavage Ce WBls:0000393
  The time period encompassing the 281st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 281 min post first-cleavage Ce WBls:0000392
  The time period encompassing the 280th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 280 min post first-cleavage Ce WBls:0000391
  The time period encompassing the 287th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 287 min post first-cleavage Ce WBls:0000398
  The time period encompassing the 324th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 324 min post first-cleavage Ce WBls:0000435
  The time period encompassing the 286th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 286 min post first-cleavage Ce WBls:0000397
  The time period encompassing the 323rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 323 min post first-cleavage Ce WBls:0000434
  The time period encompassing the 285th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 285 min post first-cleavage Ce WBls:0000396
  The time period encompassing the 322nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 322 min post first-cleavage Ce WBls:0000433
  The time period encompassing the 284th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 284 min post first-cleavage Ce WBls:0000395
  The time period encompassing the 321st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 321 min post first-cleavage Ce WBls:0000432
  The time period encompassing the 291st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 291 min post first-cleavage Ce WBls:0000402
  The time period encompassing the 290th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 290 min post first-cleavage Ce WBls:0000401