WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred Expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10486
Paste the following link
Lists
This ExpressionPattern isn't in any lists. Upload a list.

35 Anatomy Terms

Definition Name Synonym Primary Identifier
Seam hypodermal cell, postembryonic blast cell H1L lineage name: ABplaaappp WBbt:0004766
Seam hypodermal cell H0L lineage name: ABplaaappa WBbt:0004778
Neuron, presynaptic in ring, ending in head URYDR lineage name: ABalapppapp WBbt:0004922
embryonic cell ABplaaapa   WBbt:0006680
embryonic cell ABalppaa   WBbt:0005944
embryonic cell ABalppapp   WBbt:0005938
embryonic cell ABplpaaaa   WBbt:0006099
embryonic cell ABpraapaa   WBbt:0006108
embryonic cell ABplpapap   WBbt:0006177
Embryonic cell of pedigree Cpppppd. Cpppppd DR23 WBbt:0006113
Embryonic cell of pedigree Cpppapp. Cpppapp DR24 WBbt:0006660
Embryonic cell of pedigree Cpppapa. Cpppapa DR20 WBbt:0006740
Embryonic cell of pedigree Cpppppv. Cpppppv lineage name: Cpppppv WBbt:0005890
embryonic cell ABarpaapa   WBbt:0005844
embryonic cell Caaaa   WBbt:0005899
Embryonic cell of lineage Cpaapa fuses into embryonic large hypodermal syncytium hyp7. Cpaapa   WBbt:0005886
embryonic cell ABarpapap   WBbt:0005867
embryonic cell ABalappapp   WBbt:0006003
Embryonic cell of pedigree ABplaaaapp, hyp6 syncytium precursor. ABplaaaapp   WBbt:0006190
embryonic cell Cappp   WBbt:0006185
embryonic cell ABplpppaa   WBbt:0006222
embryonic cell Cpaaa   WBbt:0006212
embryonic cell ABarpappa   WBbt:0006273
embryonic cell ABplppppa   WBbt:0006352
embryonic cell Capap   WBbt:0006307
embryonic cell ABarpaaap   WBbt:0006499
embryonic cell ABarppaa   WBbt:0006465
embryonic cell ABarppapa   WBbt:0006529
embryonic cell ABplaapaap   WBbt:0006518
embryonic cell ABplppppp   WBbt:0006574

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001174 egl-5 C08C3.1 Caenorhabditis elegans

409 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 143rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 143 min post first-cleavage Ce WBls:0000254
  The time period encompassing the 142nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 142 min post first-cleavage Ce WBls:0000253
  The time period encompassing the 147th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 147 min post first-cleavage Ce WBls:0000258
  The time period encompassing the 146th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 146 min post first-cleavage Ce WBls:0000257
  The time period encompassing the 145th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 145 min post first-cleavage Ce WBls:0000256
  The time period encompassing the 144th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 144 min post first-cleavage Ce WBls:0000255
  The time period encompassing the 151st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 151 min post first-cleavage Ce WBls:0000262
  The time period encompassing the 150th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 150 min post first-cleavage Ce WBls:0000261
  The time period encompassing the 149th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 149 min post first-cleavage Ce WBls:0000260
  The time period encompassing the 148th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 148 min post first-cleavage Ce WBls:0000259
  The time period encompassing the 155th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 155 min post first-cleavage Ce WBls:0000266
  The time period encompassing the 154th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 154 min post first-cleavage Ce WBls:0000265
  The time period encompassing the 153rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 153 min post first-cleavage Ce WBls:0000264
  The time period encompassing the 152nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 152 min post first-cleavage Ce WBls:0000263
  The time period encompassing the 159th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 159 min post first-cleavage Ce WBls:0000270
  The time period encompassing the 158th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 158 min post first-cleavage Ce WBls:0000269
  The time period encompassing the 157th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 157 min post first-cleavage Ce WBls:0000268
  The time period encompassing the 156th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 156 min post first-cleavage Ce WBls:0000267
  The time period encompassing the 163rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 163 min post first-cleavage Ce WBls:0000274
  The time period encompassing the 162nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 162 min post first-cleavage Ce WBls:0000273
  The time period encompassing the 161st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 161 min post first-cleavage Ce WBls:0000272
  The time period encompassing the 160th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 160 min post first-cleavage Ce WBls:0000271
  The time period encompassing the 166th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 166 min post first-cleavage Ce WBls:0000277
  The time period encompassing the 165th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 165 min post first-cleavage Ce WBls:0000276
  The time period encompassing the 164th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 164 min post first-cleavage Ce WBls:0000275
  The time period encompassing the 267th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 267 min post first-cleavage Ce WBls:0000378
  The time period encompassing the 266th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 266 min post first-cleavage Ce WBls:0000377
  The time period encompassing the 265th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 265 min post first-cleavage Ce WBls:0000376
  The time period encompassing the 264th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 264 min post first-cleavage Ce WBls:0000375
  The time period encompassing the 271st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 271 min post first-cleavage Ce WBls:0000382