WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10307
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243 Anatomy Terms

Definition Name Synonym Primary Identifier
H-shaped cell associated with the excretory system, largest cell in C. elegans. excretory cell excretory canal cell WBbt:0005812
embryonic cell ABplapapaa QV5L WBbt:0006017
embryonic cell ABprapapaa QV5R WBbt:0006282
Postembryonic blast cells for ventral cord motorneurons, ventral hypodermis, vulva, male preanal ganglion; ventral hypodermis in L1 P11 lineage name: ABplapappa WBbt:0004410
Postembryonic blast cells for ventral cord motorneurons, ventral hypodermis, vulva, male preanal ganglion; ventral hypodermis in L1 P12 lineage name: ABprapappa WBbt:0004409
The tenth (count from anterior-most) of twelve postembryonic blast cells for ventral cord motorneurons, ventral hypodermis, vulva, male preanal ganglion; ventral hypodermis in L1. P10   WBbt:0006779
Seam hypodermal cell H0R lineage name: ABarpapppa WBbt:0004777
Neuron class of one asymmetric interneuron, projects along ventral cord to ring, sends process into tail spike. PVR lineage name: Caappv WBbt:0004072
Ring motor neuron RMEV lineage name: ABplpappaaa WBbt:0005021
Tail seam hypodermal cell, postembryonic blast cell, functions as phasmid socket in L1 TL lineage name: ABplappppp WBbt:0004946
Seam hypodermal cell, postembryonic blast cell V1R lineage name: ABarppppaa WBbt:0004904
Seam hypodermal cell, postembryonic blast cell V1L lineage name: ABarppapaa WBbt:0004905
Seam hypodermal cell, postembryonic blast cell V6L lineage name: ABarppappp WBbt:0004875
Seam hypodermal cell, postembryonic blast cell V6R lineage name: ABarpppppp WBbt:0004874
Seam hypodermal cell, postembryonic blast cell V4L lineage name: ABarppappa WBbt:0004894
Seam hypodermal cell, postembryonic blast cell V4R lineage name: ABarpppppa WBbt:0004892
Seam hypodermal cell, postembryonic blast cell V2L lineage name: ABarppapap WBbt:0004902
Seam hypodermal cell, postembryonic blast cell V3L lineage name: ABplappapa WBbt:0004898
Seam hypodermal cell, postembryonic blast cell V3R lineage name: ABprappapa WBbt:0004896
embryonic cell ABalaappa   WBbt:0006037
embryonic cell ABalapapa   WBbt:0006314
embryonic cell ABalppapa   WBbt:0005846
embryonic cell ABalpaaap   WBbt:0005850
embryonic cell Dapp   WBbt:0005870
embryonic cell Dapa   WBbt:0006004
embryonic cell ABalppaap   WBbt:0006020
embryonic cell ABaraappp   WBbt:0006064
embryonic cell Dpap   WBbt:0006054
embryonic cell Dppa   WBbt:0006106
embryonic cell ABalppaaa   WBbt:0006129

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008999 myrf-2 F21A10.2 Caenorhabditis elegans

372 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 163rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 163 min post first-cleavage Ce WBls:0000274
  The time period encompassing the 162nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 162 min post first-cleavage Ce WBls:0000273
  The time period encompassing the 166th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 166 min post first-cleavage Ce WBls:0000277
  The time period encompassing the 165th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 165 min post first-cleavage Ce WBls:0000276
  The time period encompassing the 164th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 164 min post first-cleavage Ce WBls:0000275
  The time period encompassing the 267th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 267 min post first-cleavage Ce WBls:0000378
  The time period encompassing the 266th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 266 min post first-cleavage Ce WBls:0000377
  The time period encompassing the 265th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 265 min post first-cleavage Ce WBls:0000376
  The time period encompassing the 264th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 264 min post first-cleavage Ce WBls:0000375
  The time period encompassing the 271st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 271 min post first-cleavage Ce WBls:0000382
  The time period encompassing the 270th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 270 min post first-cleavage Ce WBls:0000381
  The time period encompassing the 269th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 269 min post first-cleavage Ce WBls:0000380
  The time period encompassing the 268th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 268 min post first-cleavage Ce WBls:0000379
  The time period encompassing the 275th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 275 min post first-cleavage Ce WBls:0000386
  The time period encompassing the 274th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 274 min post first-cleavage Ce WBls:0000385
  The time period encompassing the 273rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 273 min post first-cleavage Ce WBls:0000384
  The time period encompassing the 272nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 272 min post first-cleavage Ce WBls:0000383
  The time period encompassing the 279th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 279 min post first-cleavage Ce WBls:0000390
  The time period encompassing the 278th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 278 min post first-cleavage Ce WBls:0000389
  The time period encompassing the 277th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 277 min post first-cleavage Ce WBls:0000388
  The time period encompassing the 276th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 276 min post first-cleavage Ce WBls:0000387
  The time period encompassing the 283rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 283 min post first-cleavage Ce WBls:0000394
  The time period encompassing the 282nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 282 min post first-cleavage Ce WBls:0000393
  The time period encompassing the 281st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 281 min post first-cleavage Ce WBls:0000392
  The time period encompassing the 280th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 280 min post first-cleavage Ce WBls:0000391
  The time period encompassing the 287th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 287 min post first-cleavage Ce WBls:0000398
  The time period encompassing the 324th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 324 min post first-cleavage Ce WBls:0000435
  The time period encompassing the 286th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 286 min post first-cleavage Ce WBls:0000397
  The time period encompassing the 323rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 323 min post first-cleavage Ce WBls:0000434
  The time period encompassing the 285th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 285 min post first-cleavage Ce WBls:0000396