WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred Expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10527
Paste the following link
Lists
This ExpressionPattern isn't in any lists. Upload a list.

8 Anatomy Terms

Definition Name Synonym Primary Identifier
Amphid interneuron AIYL lineage name: ABplpapaaap WBbt:0003963
Amphid interneuron AIYR lineage name: ABprpapaaap WBbt:0003961
Ring motor neuron/interneuron, has a posteriorly direct ed process that runs sublaterally SMDDR lineage name: ABprpapaaaa WBbt:0004971
Ring motor neuron/interneuron, has a posteriorly direct ed process that runs sublaterally SMDDL lineage name: ABplpapaaaa WBbt:0004972
embryonic cell ABpraaaap   WBbt:0006141
embryonic cell ABalaaaala   WBbt:0005966
embryonic cell ABalpppappa   WBbt:0006384
embryonic cell ABalpppappp   WBbt:0006623

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006654 ttx-3 C40H5.5 Caenorhabditis elegans

304 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 287th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 287 min post first-cleavage Ce WBls:0000398
  The time period encompassing the 324th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 324 min post first-cleavage Ce WBls:0000435
  The time period encompassing the 286th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 286 min post first-cleavage Ce WBls:0000397
  The time period encompassing the 323rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 323 min post first-cleavage Ce WBls:0000434
  The time period encompassing the 285th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 285 min post first-cleavage Ce WBls:0000396
  The time period encompassing the 322nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 322 min post first-cleavage Ce WBls:0000433
  The time period encompassing the 284th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 284 min post first-cleavage Ce WBls:0000395
  The time period encompassing the 321st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 321 min post first-cleavage Ce WBls:0000432
  The time period encompassing the 291st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 291 min post first-cleavage Ce WBls:0000402
  The time period encompassing the 290th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 290 min post first-cleavage Ce WBls:0000401
  The time period encompassing the 289th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 289 min post first-cleavage Ce WBls:0000400
  The time period encompassing the 288th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 288 min post first-cleavage Ce WBls:0000399
  The time period encompassing the 325th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 325 min post first-cleavage Ce WBls:0000436
  The time period encompassing the 295th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 295 min post first-cleavage Ce WBls:0000406
  The time period encompassing the 294th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 294 min post first-cleavage Ce WBls:0000405
  The time period encompassing the 293rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 293 min post first-cleavage Ce WBls:0000404
  The time period encompassing the 292nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 292 min post first-cleavage Ce WBls:0000403
  The time period encompassing the 299th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 299 min post first-cleavage Ce WBls:0000410
  The time period encompassing the 298th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 298 min post first-cleavage Ce WBls:0000409
  The time period encompassing the 297th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 297 min post first-cleavage Ce WBls:0000408
  The time period encompassing the 296th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 296 min post first-cleavage Ce WBls:0000407
  The time period encompassing the 303rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 303 min post first-cleavage Ce WBls:0000414
  The time period encompassing the 302nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 302 min post first-cleavage Ce WBls:0000413
  The time period encompassing the 301st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 301 min post first-cleavage Ce WBls:0000412
  The time period encompassing the 300th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 300 min post first-cleavage Ce WBls:0000411
  The time period encompassing the 307th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 307 min post first-cleavage Ce WBls:0000418
  The time period encompassing the 306th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 306 min post first-cleavage Ce WBls:0000417
  The time period encompassing the 305th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 305 min post first-cleavage Ce WBls:0000416
  The time period encompassing the 304th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 304 min post first-cleavage Ce WBls:0000415
  The time period encompassing the 311st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 311 min post first-cleavage Ce WBls:0000422